((سُبْحَانَ الَّذِي يُسَبِّحُ الرَّعْدُ بِحَمْدِهِ وَالْمَلاَئِكةُ مِنْ خِيفَتِهِ)).
Transliteration
(Subhanal-lathee yusabbihur-raAAdu bihamdih, walmala-ikatu min kheefatih.)
Translation
(How perfect He is, (The One) Whom the thunder declares His perfection with His praise, as do the angles out of fear of Him.)
Source
Hisnul Muslim (Fortress of the Muslim), No. 168 — chapter “Invocation for when it thunder”. hisnmuslim.com
Related Duas
Invocations for when the wind blows
Supplication 1 of 2
((اللَّهُمَّ إِنِّي أَسْــــــأَلُكَ خَيْرَهَا، وَأَعُوذُ بِكَ مِنْ شَرِّهَا)).
(O Allah, I ask You for it’s goodness and I take refuge with You from it’s evil.)
Hisnul Muslim · No. 166
Some invocations for rain
Supplication 1 of 3
((اللَّهُمَّ اسْقِنَا غَيْثاً مُغِيثاً مَرِيئاً مَرِيعاً، نَافِعاً غَيْرَ ضَارٍّ، عَاجِلاً غَيْرَ آجِلٍ)).
(O Allah, send upon us helpful, wholesome and healthy rain, beneficial not harmful rain, now, not later.)
Hisnul Muslim · No. 169
((اللَّهُمَّ صَيِّباً نَافِعاً)).
(O Allah, may it be a beneficial rain cloud.)
Hisnul Muslim · No. 172